Transcript: lnc-SPATA32-1:6

Basic information

LNCipedia transcript ID: lnc-SPATA32-1:6 
LNCipedia gene ID: lnc-SPATA32-1
Ensembl Gene ID: ENSG00000233175
Ensembl Transcript ID: ENST00000393507
Location (hg38): chr17:45240315-45241197
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 377 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000393507.2; AC138150.4-001; OTTHUMT00000255759.1; NONHSAT054044
Alternative gene names: ENSG00000233175.1; AC138150.4; OTTHUMG00000132557.1; ENSG00000233175.2; CTD-2020K17.3; AC008105.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 34.0554 non-coding 
CPAT coding probability 38.77% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA32-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf46-1:1
4.0 lnc-C17orf46-1:1
4.1 lnc-C17orf46-1:1
5.0 lnc-C17orf46-1:1
5.1 lnc-GFAP-20:6
5.2 lnc-SPATA32-1:6