Transcript: lnc-SPATA32-2:12

Basic information

LNCipedia transcript ID: lnc-SPATA32-2:12 
LNCipedia gene ID: lnc-SPATA32-2
Location (hg38): chr17:45212249-45221765
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1685 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000498986; NONHSAT054032
Alternative gene names: ENSG00000246393; AC008105.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2603 non-coding 
CPAT coding probability 61.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA32-2:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C17orf46-1:1
3.1 lnc-C17orf46-2:1
4.0 lnc-C17orf46-2:1
4.1 lnc-C17orf46-2:1
5.0 lnc-C17orf46-2:1
5.1 lnc-GFAP-19:12
5.2 lnc-SPATA32-2:12