Transcript: lnc-SPATA32-2:5

Basic information

LNCipedia transcript ID: lnc-SPATA32-2:5 
LNCipedia gene ID: lnc-SPATA32-2
Ensembl Gene ID: ENSG00000267121
Ensembl Transcript ID: ENST00000591365
Location (hg38): chr17:45219350-45222222
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2238 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054035; ENST00000591365.1
Alternative gene names: ENSG00000267121.1; CTD-2020K17.1; ENSG00000267121.5; AC008105.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.8177 non-coding 
CPAT coding probability 97.93% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA32-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf46-2:2
4.0 lnc-C17orf46-2:2
4.1 lnc-C17orf46-2:2
5.0 lnc-C17orf46-2:2
5.1 lnc-GFAP-19:5
5.2 lnc-SPATA32-2:5