Transcript: lnc-SPATA6-8:2

Basic information

LNCipedia transcript ID: lnc-SPATA6-8:2 
LNCipedia gene ID: lnc-SPATA6-8
Location (hg38): chr1:47765636-47801623
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1158 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000371865
Alternative gene names: ENSG00000204018; RP11-543D5.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2368.6254 coding 
CPAT coding probability 99.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA6-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-543D5.3.1-1:1
3.1 lnc-RP11-543D5.3.1-1:1
4.0 lnc-RP11-543D5.3.1-1:1
4.1 lnc-RP11-543D5.3.1-1:1
5.0 lnc-RP11-543D5.3.1-1:1
5.1 lnc-STIL-1:7
5.2 lnc-SPATA6-8:2