Transcript: lnc-SPATA9-1:1

Basic information

LNCipedia transcript ID: lnc-SPATA9-1:1 
LNCipedia gene ID: lnc-SPATA9-1
Ensembl Gene ID: ENSG00000250240
Ensembl Transcript ID: ENST00000512486
Location (hg38): chr5:95701249-95732295
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 809 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512486.1; CTD-2154I11.2-002; OTTHUMT00000370263.1; NONHSAT102856; ENST00000512486.5
Alternative gene names: ENSG00000250240.1; CTD-2154I11.2; OTTHUMG00000162735.1; ENSG00000250240.5; AC008840.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.7947 non-coding 
CPAT coding probability 13.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA9-1:1
4.0 lnc-SPATA9-1:1
4.1 lnc-SPATA9-1:1
5.0 lnc-SPATA9-1:1
5.1 lnc-ANKRD34B-196:1
5.2 lnc-SPATA9-1:1