Transcript: lnc-SPATA9-1:4

Basic information

LNCipedia transcript ID: lnc-SPATA9-1:4 
LNCipedia gene ID: lnc-SPATA9-1
Location (hg38): chr5:95716982-95732100
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 390 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250240.1|ENST00000513235.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.4622 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA9-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPATA9-1:4
5.0 lnc-SPATA9-1:4
5.1 lnc-ANKRD34B-196:4
5.2 lnc-SPATA9-1:4