Transcript: lnc-SPCS3-2:2

Basic information

LNCipedia transcript ID: lnc-SPCS3-2:2 
LNCipedia gene ID: lnc-SPCS3-2
Ensembl Gene ID: ENSG00000248388
Ensembl Transcript ID: ENST00000504017
Location (hg38): chr4:176669621-176706069
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 307 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504017.1; RP11-313E19.2-001; OTTHUMT00000361987.1; NONHSAT099365; ENST00000504017.5
Alternative gene names: ENSG00000248388.1; RP11-313E19.2; OTTHUMG00000160733.1; ENSG00000248388.5; AC093801.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.5391 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPCS3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPCS3-2:2
4.0 lnc-SPCS3-2:2
4.1 lnc-SPCS3-2:2
5.0 lnc-SPCS3-2:2
5.1 lnc-GALNTL6-47:2
5.2 lnc-SPCS3-2:2