Transcript: lnc-SPDYE1-1:1

Basic information

LNCipedia transcript ID: lnc-SPDYE1-1:1 
LNCipedia gene ID: lnc-SPDYE1-1
Location (hg38): chr7:44019961-44026368
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 920 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000510452; NONHSAT120332
Alternative gene names: ENSG00000250121; AC017116.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.5374 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPDYE1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPDYE1-1:1
3.1 lnc-SPDYE1-1:1
4.0 lnc-SPDYE1-1:1
4.1 lnc-SPDYE1-1:1
5.0 lnc-SPDYE1-1:1
5.1 lnc-CCT6A-147:1
5.2 lnc-SPDYE1-1:1