Transcript: lnc-SPDYE6-2:2

Basic information

LNCipedia transcript ID: lnc-SPDYE6-2:2 
LNCipedia gene ID: lnc-SPDYE6-2
Ensembl Gene ID: ENSG00000261535
Ensembl Transcript ID: ENST00000566572
Location (hg38): chr7:102153355-102154463
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 801 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558393.1; CTA-305I2.1-001; OTTHUMT00000418422.1; NONHSAT122476; ENST00000566572.1
Alternative gene names: ENSG00000259263.1; CTA-305I2.1; OTTHUMG00000172409.1; ENSG00000261535.1; AC005086.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.8665 non-coding 
CPAT coding probability 7.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPDYE6-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALKBH4-2:1
4.0 lnc-ALKBH4-2:1
4.1 lnc-ALKBH4-2:1
5.0 lnc-ALKBH4-2:1
5.1 lnc-SPDYE6-2:1
5.2 lnc-SPDYE6-2:2