Transcript: lnc-SPECC1-1:2

Basic information

LNCipedia transcript ID: lnc-SPECC1-1:2 
LNCipedia gene ID: lnc-SPECC1-1
RefSeq ID: NR_126160
Location (hg38): chr17:20417292-20419050
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1759 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126160; NR_126160.1
Alternative gene names: FAM106B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.8072 non-coding 
CPAT coding probability 30.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPECC1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM106B-1:7
4.0 lnc-FAM106B-1:7
4.1 lnc-FAM106B-1:7
5.0 lnc-FAM106B-1:7
5.1 lnc-PIPOX-114:1
5.2 lnc-SPECC1-1:2