Transcript: lnc-SPECC1-5:3

Basic information

LNCipedia transcript ID: lnc-SPECC1-5:3 
LNCipedia gene ID: lnc-SPECC1-5
Location (hg38): chr17:20416097-20417288
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1192 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000583574.1; AC015818.11-001; OTTHUMT00000443754.1; NONHSAT146568
Alternative gene names: ENSG00000266348.1; AC015818.11; OTTHUMG00000130725.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.9587 non-coding 
CPAT coding probability 9.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPECC1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM106B-1:1
4.0 lnc-FAM106B-1:1
4.1 lnc-FAM106B-1:1
5.0 lnc-FAM106B-1:1
5.1 lnc-PIPOX-115:3
5.2 lnc-SPECC1-5:3