Transcript: lnc-SPG7-4:2

Basic information

LNCipedia transcript ID: lnc-SPG7-4:2 
LNCipedia gene ID: lnc-SPG7-4
RefSeq ID: NR_110931
Location (hg38): chr16:89430918-89454494
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1817 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110931; NR_110931.1
Alternative gene names: LOC101927817


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -73.5896 non-coding 
CPAT coding probability 3.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPG7-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPG7-1:2
4.0 lnc-SPG7-4:2
4.1 lnc-SPG7-4:2
5.0 lnc-SPG7-4:2
5.1 lnc-SPG7-5:1
5.2 lnc-SPG7-4:2