Transcript: lnc-SPINT2-9:1

Basic information

LNCipedia transcript ID: lnc-SPINT2-9:1 
LNCipedia gene ID: lnc-SPINT2-9
Ensembl Gene ID: ENSG00000268051
Ensembl Transcript ID: ENST00000601752
Location (hg38): chr19:37963853-37964790
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 607 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT066183; ENST00000601752.1
Alternative gene names: ENSG00000268051.1; CTC-244M17.1; AC008395.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.4206 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPINT2-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPINT2-9:1
4.0 lnc-SPINT2-9:1
4.1 lnc-SPINT2-9:1
5.0 lnc-SPINT2-9:1
5.1 lnc-ZNF540-16:1
5.2 lnc-SPINT2-9:1