Transcript: lnc-SPNS3-1:10

Basic information

LNCipedia transcript ID: lnc-SPNS3-1:10 
LNCipedia gene ID: lnc-SPNS3-1
Location (hg38): chr17:4159801-4160702
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 843 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025807
Alternative gene names: XLOC_012083; linc-SPNS3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.1189 non-coding 
CPAT coding probability 5.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPNS3-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYB5D2-1:3
3.1 lnc-CYB5D2-1:3
4.0 lnc-CYB5D2-1:3
4.1 lnc-CYB5D2-1:3
5.0 lnc-CYB5D2-1:3
5.1 lnc-RPA1-75:7
5.2 lnc-SPNS3-1:10