Transcript: lnc-SPO11-1:2

Basic information

LNCipedia transcript ID: lnc-SPO11-1:2 
LNCipedia gene ID: lnc-SPO11-1
Location (hg38): chr20:57266797-57282995
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1163 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00027871
Alternative gene names: XLOC_013583; linc-SPO11-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.2811 non-coding 
CPAT coding probability 13.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPO11-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPO11-1:2
3.1 lnc-SPO11-1:2
4.0 lnc-SPO11-1:2
4.1 lnc-SPO11-1:2
5.0 lnc-SPO11-1:2
5.1 lnc-MC3R-22:6
5.2 lnc-SPO11-1:2