Transcript: lnc-SPO11-1:7

Basic information

LNCipedia transcript ID: lnc-SPO11-1:7 
LNCipedia gene ID: lnc-SPO11-1
Location (hg38): chr20:57264373-57287660
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6437 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226308.1|MICT00000220614.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 27.853 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPO11-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPO11-1:7
5.0 lnc-SPO11-1:7
5.1 lnc-MC3R-22:1
5.2 lnc-SPO11-1:7