Transcript: lnc-SPOCD1-4:3

Basic information

LNCipedia transcript ID: lnc-SPOCD1-4:3 
LNCipedia gene ID: lnc-SPOCD1-4
Location (hg38): chr1:31768086-31788606
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1688 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000054022.1|MICT00000007148.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -97.1519 non-coding 
CPAT coding probability 4.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOCD1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPOCD1-4:3
5.0 lnc-SPOCD1-4:3
5.1 lnc-COL16A1-6:1
5.2 lnc-SPOCD1-4:3