Transcript: lnc-SPOCK2-3:1

Basic information

LNCipedia transcript ID: lnc-SPOCK2-3:1 
LNCipedia gene ID: lnc-SPOCK2-3
Ensembl Gene ID: ENSG00000272988
Ensembl Transcript ID: ENST00000609403
Location (hg38): chr10:72053294-72054037
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 744 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609403.1
Alternative gene names: ENSG00000272988.1; RP11-150D20.5; AC022392.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.1199 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOCK2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPOCK2-1:1
4.0 lnc-SPOCK2-3:1
4.1 lnc-SPOCK2-3:1
5.0 lnc-SPOCK2-3:1
5.1 lnc-VSIR-3:1
5.2 lnc-SPOCK2-3:1