Transcript: lnc-SPOCK3-1:1

Basic information

LNCipedia transcript ID: lnc-SPOCK3-1:1 
LNCipedia gene ID: lnc-SPOCK3-1
Location (hg38): chr4:167306912-167308789
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00007443
Alternative gene names: XLOC_004149; linc-SPOCK3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.1375 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOCK3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPOCK3-1:1
3.1 lnc-SPOCK3-1:1
4.0 lnc-SPOCK3-1:1
4.1 lnc-SPOCK3-1:1
5.0 lnc-SPOCK3-1:1
5.1 lnc-CBR4-12:1
5.2 lnc-SPOCK3-1:1