Transcript: lnc-SPOCK3-2:1

Basic information

LNCipedia transcript ID: lnc-SPOCK3-2:1 
LNCipedia gene ID: lnc-SPOCK3-2
Ensembl Gene ID: ENSG00000249675
Ensembl Transcript ID: ENST00000514134
Location (hg38): chr4:166388701-166526119
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 934 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007893; ENST00000514134; ENST00000514134.1; RP11-217C7.1-001; OTTHUMT00000366137.1; NONHSAT099115
Alternative gene names: XLOC_004148; linc-TMEM192-1; ENSG00000249675; RP11-217C7.1; ENSG00000249675.1; OTTHUMG00000161810.1; AC097487.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.1224 non-coding 
CPAT coding probability 8.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOCK3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPOCK3-2:1
3.1 lnc-SPOCK3-2:1
4.0 lnc-SPOCK3-2:1
4.1 lnc-SPOCK3-2:1
5.0 lnc-SPOCK3-2:1
5.1 lnc-TRIM61-14:1
5.2 lnc-SPOCK3-2:1