Transcript: lnc-SPON2-1:2

Basic information

LNCipedia transcript ID: lnc-SPON2-1:2 
LNCipedia gene ID: lnc-SPON2-1
RefSeq ID: NR_024569
Location (hg38): chr4:1195783-1208962
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4981 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT094677; NR_024569; NR_024569.1
Alternative gene names: LOC100130872


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.0554 non-coding 
CPAT coding probability 29.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPON2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092535.1-1:1
4.0 lnc-SPON2-1:2
4.1 lnc-SPON2-1:2
5.0 lnc-SPON2-1:2
5.1 lnc-PSAPL1-90:1
5.2 lnc-SPON2-1:2