Transcript: lnc-SPOP-1:1

Basic information

LNCipedia transcript ID: lnc-SPOP-1:1 
LNCipedia gene ID: lnc-SPOP-1
Ensembl Gene ID: ENSG00000250310
Ensembl Transcript ID: ENST00000503624
Location (hg38): chr17:49544847-49577962
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 577 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503624.1; RP5-1029K10.4-001; OTTHUMT00000365156.1; NONHSAT054543
Alternative gene names: ENSG00000250310.1; RP5-1029K10.4; OTTHUMG00000161497.1; AC006487.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.835 non-coding 
CPAT coding probability 4.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPOP-1:1
4.0 lnc-SPOP-1:1
4.1 lnc-SPOP-1:1
5.0 lnc-SPOP-1:1
5.1 lnc-ZNF652-8:1
5.2 lnc-SPOP-1:1