Transcript: lnc-SPOPL-1:1

Basic information

LNCipedia transcript ID: lnc-SPOPL-1:1 
LNCipedia gene ID: lnc-SPOPL-1
Ensembl Gene ID: ENSG00000230569
Ensembl Transcript ID: ENST00000412593
Location (hg38): chr2:138470656-138473932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 826 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003010; ENST00000412593; ENST00000412593.1; AC114763.1-001; OTTHUMT00000331840.1; NONHSAT074670
Alternative gene names: XLOC_001687; linc-SPOPL-1; ENSG00000230569; AC114763.1; ENSG00000230569.1; OTTHUMG00000153617.1; AC114763.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.7917 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOPL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPOPL-1:1
3.1 lnc-SPOPL-1:1
4.0 lnc-SPOPL-1:1
4.1 lnc-SPOPL-1:1
5.0 lnc-SPOPL-1:1
5.1 lnc-GPR17-130:2
5.2 lnc-SPOPL-1:1