Transcript: lnc-SPOPL-2:2

Basic information

LNCipedia transcript ID: lnc-SPOPL-2:2 
LNCipedia gene ID: lnc-SPOPL-2
Location (hg38): chr2:138569090-138574248
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 534 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000458007.1; AC092620.2-001; OTTHUMT00000331894.1; NONHSAT074673
Alternative gene names: ENSG00000241772.1; AC092620.2; OTTHUMG00000153633.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.7528 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOPL-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HNMT-2:1
4.0 lnc-SPOPL-2:2
4.1 lnc-SPOPL-2:2
5.0 lnc-SPOPL-2:2
5.1 lnc-GPR17-132:1
5.2 lnc-SPOPL-2:2