Transcript: lnc-SPOPL-3:2

Basic information

LNCipedia transcript ID: lnc-SPOPL-3:2 
LNCipedia gene ID: lnc-SPOPL-3
Location (hg38): chr2:139259939-139263979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 982 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003887; NONHSAT074684
Alternative gene names: XLOC_001690; linc-KYNU-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.1385 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOPL-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPOPL-3:1
3.1 lnc-SPOPL-3:2
4.0 lnc-SPOPL-3:2
4.1 lnc-SPOPL-3:2
5.0 lnc-SPOPL-3:2
5.1 lnc-GPR17-138:1
5.2 lnc-SPOPL-3:2