Transcript: lnc-SPOPL-3:3

Basic information

LNCipedia transcript ID: lnc-SPOPL-3:3 
LNCipedia gene ID: lnc-SPOPL-3
Location (hg38): chr2:139262054-139263643
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004903
Alternative gene names: XLOC_001690; linc-KYNU-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.3665 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPOPL-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPOPL-3:3
3.1 lnc-SPOPL-3:3
4.0 lnc-SPOPL-3:3
4.1 lnc-SPOPL-3:3
5.0 lnc-SPOPL-3:3
5.1 lnc-GPR17-138:3
5.2 lnc-SPOPL-3:3