Transcript: lnc-SPP2-2:2

Basic information

LNCipedia transcript ID: lnc-SPP2-2:2 
LNCipedia gene ID: lnc-SPP2-2
Ensembl Gene ID: ENSG00000261298
Ensembl Transcript ID: ENST00000569111
Location (hg38): chr2:234223314-234224514
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1201 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569111.1; RP11-309M7.1-001; OTTHUMT00000431737.1; NONHSAT077530
Alternative gene names: ENSG00000261298.1; RP11-309M7.1; OTTHUMG00000176300.1; AC122134.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.504 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPP2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPP2-2:2
4.0 lnc-SPP2-2:2
4.1 lnc-SPP2-2:2
5.0 lnc-SPP2-2:2
5.1 lnc-ACKR3-30:2
5.2 lnc-SPP2-2:2