Transcript: lnc-SPP2-3:1

Basic information

LNCipedia transcript ID: lnc-SPP2-3:1 
LNCipedia gene ID: lnc-SPP2-3
Ensembl Gene ID: ENSG00000228162
Ensembl Transcript ID: ENST00000418025
Location (hg38): chr2:234438328-234462127
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418025; ENST00000418025.1; AC097713.3-001; OTTHUMT00000329804.1; NONHSAT077532
Alternative gene names: ENSG00000228162; AC097713.3; ENSG00000228162.1; OTTHUMG00000153158.1; AC097713.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.9703 non-coding 
CPAT coding probability 5.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPP2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPP2-2:1
3.1 lnc-SPP2-3:1
4.0 lnc-SPP2-3:1
4.1 lnc-SPP2-3:1
5.0 lnc-SPP2-3:1
5.1 lnc-ACKR3-26:1
5.2 lnc-SPP2-3:1