Transcript: lnc-SPPL3-1:1

Basic information

LNCipedia transcript ID: lnc-SPPL3-1:1 
LNCipedia gene ID: lnc-SPPL3-1
Location (hg38): chr12:120740470-120761613
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000255946.1|ENST00000542620.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -115.8641 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPPL3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPPL3.1-1:2
5.0 lnc-SPPL3.1-1:2
5.1 lnc-SRSF9-10:1
5.2 lnc-SPPL3-1:1