Transcript: lnc-SPRED2-1:2

Basic information

LNCipedia transcript ID: lnc-SPRED2-1:2 
LNCipedia gene ID: lnc-SPRED2-1
Location (hg38): chr2:65450353-65455697
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000453714; ENST00000453714.2; AC012370.3-001; OTTHUMT00000327687.2
Alternative gene names: ENSG00000234255; AC012370.3; ENSG00000234255.2; OTTHUMG00000152758.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.7748 non-coding 
CPAT coding probability 3.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRED2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRED2-1:2
3.1 lnc-SPRED2-1:2
4.0 lnc-SPRED2-1:2
4.1 lnc-SPRED2-1:2
5.0 lnc-SPRED2-1:2
5.1 lnc-GKN2-71:11
5.2 lnc-SPRED2-1:2