Transcript: lnc-SPRED2-1:4

Basic information

LNCipedia transcript ID: lnc-SPRED2-1:4 
LNCipedia gene ID: lnc-SPRED2-1
Ensembl Gene ID: ENSG00000234255
Ensembl Transcript ID: ENST00000601940
Location (hg38): chr2:65450074-65456551
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1320 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT071180; ENST00000601940.1; ENST00000601940.5
Alternative gene names: ENSG00000234255.4; AC012370.3; ENSG00000234255.8; AC012370.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.597 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRED2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPRED2-1:4
4.0 lnc-SPRED2-1:4
4.1 lnc-SPRED2-1:4
5.0 lnc-SPRED2-1:4
5.1 lnc-GKN2-71:2
5.2 lnc-SPRED2-1:4