Transcript: lnc-SPRED2-4:1

Basic information

LNCipedia transcript ID: lnc-SPRED2-4:1 
LNCipedia gene ID: lnc-SPRED2-4
Ensembl Gene ID: ENSG00000227293
Ensembl Transcript ID: ENST00000411785
Location (hg38): chr2:66235377-66236213
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003309; ENST00000411785; ENST00000411785.1; AC118345.1-001; OTTHUMT00000328530.1; NONHSAT071212
Alternative gene names: XLOC_002137; linc-SPRED2-5; ENSG00000227293; AC118345.1; ENSG00000227293.1; OTTHUMG00000152909.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -195.0991 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRED2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRED2-4:1
3.1 lnc-SPRED2-4:1
4.0 lnc-SPRED2-4:1
4.1 lnc-SPRED2-4:1
5.0 lnc-SPRED2-4:1
5.1 lnc-GKN2-56:1
5.2 lnc-SPRED2-4:1