Transcript: lnc-SPRED3-2:2

Basic information

LNCipedia transcript ID: lnc-SPRED3-2:2 
LNCipedia gene ID: lnc-SPRED3-2
Location (hg38): chr19:38398181-38399881
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1701 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT066216; ENST00000588453.1
Alternative gene names: ENSG00000267473.1; AC005789.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.302 non-coding 
CPAT coding probability 8.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRED3-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSMD8-2:3
4.0 lnc-SPRED3-2:2
4.1 lnc-SPRED3-2:2
5.0 lnc-SPRED3-2:2
5.1 lnc-MRPS12-15:1
5.2 lnc-SPRED3-2:2