Transcript: lnc-SPRY1-11:9

Basic information

LNCipedia transcript ID: lnc-SPRY1-11:9 
HGNC Gene Symbol: lnc-SPRY1-11    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2435
Ensembl Gene ID: ENSG00000251526
Ensembl Transcript ID: ENST00000508291
Location (hg38): chr4:123505279-123527525
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007610; ENST00000508291; ENST00000508291.1; RP11-381N20.1-001; OTTHUMT00000364452.1; NONHSAT098189
Alternative gene names: XLOC_003680; linc-FAT4-3; ENSG00000251526; RP11-381N20.1; ENSG00000251526.1; OTTHUMG00000161297.1; ; LINC02435


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.9913 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRY1-11:9 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRY1-1:4
3.1 lnc-SPRY1-1:4
4.0 lnc-SPRY1-1:4
4.1 LINC01091:20
5.0 LINC01091:20
5.1 lnc-FGF2-11:10
5.2 lnc-SPRY1-11:9