Transcript: lnc-SPRYD3-1:2

Basic information

LNCipedia transcript ID: lnc-SPRYD3-1:2 
LNCipedia gene ID: lnc-SPRYD3-1
Ensembl Gene ID: ENSG00000257337
Ensembl Transcript ID: ENST00000551890
Location (hg38): chr12:53053104-53054418
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 569 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551890.1; RP11-983P16.4-001; OTTHUMT00000405978.1; NONHSAT028407
Alternative gene names: ENSG00000257337.1; RP11-983P16.4; OTTHUMG00000169806.3; ENSG00000257337.2; ENSG00000257337.6; AC068888.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.4848 non-coding 
CPAT coding probability 5.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRYD3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPRYD3-1:2
4.0 lnc-SPRYD3-1:2
4.1 lnc-SPRYD3-1:2
5.0 lnc-SPRYD3-1:2
5.1 lnc-SPRYD3-1:2
5.2 lnc-SPRYD3-1:2