Transcript: lnc-SPRYD3-1:5

Basic information

LNCipedia transcript ID: lnc-SPRYD3-1:5 
LNCipedia gene ID: lnc-SPRYD3-1
Location (hg38): chr12:53039599-53047050
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1018 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000546566.1; RP11-983P16.4-004; OTTHUMT00000406026.1; NONHSAT028399
Alternative gene names: ENSG00000257337.1; RP11-983P16.4; OTTHUMG00000169806.3; ENSG00000257337.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.8483 non-coding 
CPAT coding probability 4.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRYD3-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPRYD3-1:5
4.0 lnc-SPRYD3-1:5
4.1 lnc-SPRYD3-1:5
5.0 lnc-SPRYD3-1:5
5.1 lnc-SPRYD3-1:5
5.2 lnc-SPRYD3-1:5