Transcript: lnc-SPTBN4-3:3

Basic information

LNCipedia transcript ID: lnc-SPTBN4-3:3 
LNCipedia gene ID: lnc-SPTBN4-3
Location (hg38): chr19:40443432-40445223
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1792 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000268366.1|HBMT00000710296.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -206.9854 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPTBN4-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPTBN4-3:3
5.0 lnc-SPTBN4-3:3
5.1 lnc-SHKBP1-3:2
5.2 lnc-SPTBN4-3:3