Transcript: lnc-SPTBN5-2:1

Basic information

LNCipedia transcript ID: lnc-SPTBN5-2:1 
LNCipedia gene ID: lnc-SPTBN5-2
Location (hg38): chr15:41769940-41773080
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1590 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000399579
Alternative gene names: ENSG00000246549


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.2605 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPTBN5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPTBN5-1:1
3.1 lnc-SPTBN5-2:1
4.0 lnc-SPTBN5-2:1
4.1 lnc-SPTBN5-2:1
5.0 lnc-SPTBN5-2:1
5.1 lnc-VPS39-10:1
5.2 lnc-SPTBN5-2:1