Transcript: lnc-SPX-1:1

Basic information

LNCipedia transcript ID: lnc-SPX-1:1 
LNCipedia gene ID: lnc-SPX-1
Ensembl Gene ID: ENSG00000256615
Ensembl Transcript ID: ENST00000541860
Location (hg38): chr12:21662313-21760032
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541860.1; RP11-59N23.3-001; OTTHUMT00000402417.1; NONHSAT027258
Alternative gene names: ENSG00000256615.1; RP11-59N23.3; OTTHUMG00000169137.1; AC010197.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.8458 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPX-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf39-1:1
4.0 lnc-C12orf39-1:1
4.1 lnc-C12orf39-1:1
5.0 lnc-C12orf39-1:1
5.1 lnc-BCL2L14-115:1
5.2 lnc-SPX-1:1