Transcript: lnc-SPX-4:2

Basic information

LNCipedia transcript ID: lnc-SPX-4:2 
LNCipedia gene ID: lnc-SPX-4
Location (hg38): chr12:21775031-21782124
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7094 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000008305.1|ENCT00000089126.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.4089 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPX-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C12orf39-4:2
5.0 lnc-C12orf39-4:2
5.1 lnc-BCL2L14-116:2
5.2 lnc-SPX-4:2