Transcript: lnc-SQOR-1:10

Basic information

LNCipedia transcript ID: lnc-SQOR-1:10 
LNCipedia gene ID: lnc-SQOR-1
Ensembl Gene ID: ENSG00000259200
Ensembl Transcript ID: ENST00000559600
RefSeq ID: NR_135680
Location (hg38): chr15:45705195-45931069
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 655 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000559600.1; RP11-718O11.1-001; OTTHUMT00000416556.1; NONHSAT042284; NR_135680.1
Alternative gene names: ENSG00000259200.1; RP11-718O11.1; OTTHUMG00000172029.1; AC068722.1; LOC105370802


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.2252 non-coding 
CPAT coding probability 7.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SQOR-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SQRDL-1:2
4.0 lnc-SQRDL-1:2
4.1 lnc-SQRDL-1:2
5.0 lnc-SQRDL-1:2
5.1 lnc-CCNDBP1-51:10
5.2 lnc-SQOR-1:10