Transcript: lnc-SQOR-1:3

Basic information

LNCipedia transcript ID: lnc-SQOR-1:3 
LNCipedia gene ID: lnc-SQOR-1
Ensembl Gene ID: ENSG00000259200
Ensembl Transcript ID: ENST00000560705
Location (hg38): chr15:45705078-45848885
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 861 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560705.1; RP11-718O11.1-002; OTTHUMT00000416555.1; NONHSAT042283
Alternative gene names: ENSG00000259200.1; RP11-718O11.1; OTTHUMG00000172029.1; AC068722.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.6795 non-coding 
CPAT coding probability 14.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SQOR-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SQRDL-1:1
4.0 lnc-SQRDL-1:1
4.1 lnc-SQRDL-1:1
5.0 lnc-SQRDL-1:1
5.1 lnc-CCNDBP1-51:3
5.2 lnc-SQOR-1:3