Transcript: lnc-SQSTM1-3:2

Basic information

LNCipedia transcript ID: lnc-SQSTM1-3:2 
LNCipedia gene ID: lnc-SQSTM1-3
Ensembl Gene ID: ENSG00000245317
Ensembl Transcript ID: ENST00000499601
Location (hg38): chr5:179859013-179861283
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1454 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499601.2
Alternative gene names: ENSG00000245317.2; CTC-241N9.1; AC008393.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.5921 non-coding 
CPAT coding probability 17.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SQSTM1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTC-241N9.1.1-3:1
4.1 lnc-CTC-241N9.1.1-3:1
5.0 lnc-CTC-241N9.1.1-3:1
5.1 lnc-SQSTM1-4:2
5.2 lnc-SQSTM1-3:2