Transcript: lnc-SRCIN1-1:10

Basic information

LNCipedia transcript ID: lnc-SRCIN1-1:10 
LNCipedia gene ID: lnc-SRCIN1-1
Ensembl Gene ID: ENSG00000276170
Ensembl Transcript ID: ENST00000619955
Location (hg38): chr17:38451161-38451903
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 643 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582649.1; AC124789.1-004; OTTHUMT00000441797.1; NONHSAT053336; ENST00000619955.1
Alternative gene names: ENSG00000260833.2; AC124789.1; OTTHUMG00000132691.3; ENSG00000276170.4; AC244153.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.4284 non-coding 
CPAT coding probability 11.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRCIN1-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRCIN1-1:10
4.0 lnc-SRCIN1-1:10
4.1 lnc-SRCIN1-1:10
5.0 lnc-SRCIN1-1:10
5.1 lnc-SRCIN1-1:10
5.2 lnc-SRCIN1-1:10