Transcript: lnc-SRPRA-3:2

Basic information

LNCipedia transcript ID: lnc-SRPRA-3:2 
LNCipedia gene ID: lnc-SRPRA-3
Ensembl Gene ID: ENSG00000255062
Ensembl Transcript ID: ENST00000528876
Location (hg38): chr11:126294307-126297126
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 509 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT025019; ENST00000528876.1
Alternative gene names: ENSG00000255062.1; RP11-712L6.5; AP001318.3; AP001318.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.1067 non-coding 
CPAT coding probability 17.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRPRA-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRPR-3:1
4.0 lnc-RP11-712L6.5.1-3:5
4.1 lnc-RP11-712L6.5.1-3:5
5.0 lnc-RP11-712L6.5.1-3:5
5.1 lnc-ADAMTS8-41:2
5.2 lnc-SRPRA-3:2