Transcript: lnc-SRPRA-9:3

Basic information

LNCipedia transcript ID: lnc-SRPRA-9:3 
LNCipedia gene ID: lnc-SRPRA-9
Ensembl Gene ID: ENSG00000254938
Ensembl Transcript ID: ENST00000530572
Location (hg38): chr11:126920188-126940659
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 566 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530572; ENST00000530572.1; RP11-688I9.4-001; OTTHUMT00000386314.1; NONHSAT025033
Alternative gene names: ENSG00000254938; RP11-688I9.4; ENSG00000254938.1; OTTHUMG00000165809.1; AP002833.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.2586 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRPRA-9:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-712L6.5.1-2:1
3.1 lnc-RP11-712L6.5.1-3:1
4.0 lnc-RP11-712L6.5.1-6:3
4.1 lnc-RP11-712L6.5.1-6:3
5.0 lnc-RP11-712L6.5.1-6:3
5.1 lnc-ADAMTS8-37:3
5.2 lnc-SRPRA-9:3