Transcript: lnc-SRR-1:1

Basic information

LNCipedia transcript ID: lnc-SRR-1:1 
LNCipedia gene ID: lnc-SRR-1
Ensembl Gene ID: ENSG00000225084
Ensembl Transcript ID: ENST00000414776
Location (hg38): chr17:2232680-2233610
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 710 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414776.1; AL450226.2-001; OTTHUMT00000255276.1
Alternative gene names: ENSG00000225084.1; AL450226.2; OTTHUMG00000132218.1; AL450226.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.032 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRR-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRR-1:1
4.0 lnc-SRR-1:1
4.1 lnc-SRR-1:1
5.0 lnc-SRR-1:1
5.1 lnc-RPA1-17:2
5.2 lnc-SRR-1:1