Transcript: lnc-SRR-1:3

Basic information

LNCipedia transcript ID: lnc-SRR-1:3 
LNCipedia gene ID: lnc-SRR-1
RefSeq ID: NR_110888
Location (hg38): chr17:2232678-2233610
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 712 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110888; NR_110888.1
Alternative gene names: LOC101927839


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -98.032 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRR-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRR-1:3
4.0 lnc-SRR-1:3
4.1 lnc-SRR-1:3
5.0 lnc-SRR-1:3
5.1 lnc-RPA1-17:1
5.2 lnc-SRR-1:3