Transcript: lnc-SRSF2-4:3

Basic information

LNCipedia transcript ID: lnc-SRSF2-4:3 
LNCipedia gene ID: lnc-SRSF2-4
Location (hg38): chr17:77273664-77273955
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 292 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000577209.1; RP11-285E9.6-003; OTTHUMT00000438608.1; NONHSAT056137
Alternative gene names: ENSG00000263718.1; RP11-285E9.6; OTTHUMG00000177704.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 8.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRSF2-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRSF2-4:3
4.0 lnc-SRSF2-4:3
4.1 lnc-SRSF2-4:3
5.0 lnc-SRSF2-4:3
5.1 lnc-ST6GALNAC2-21:3
5.2 lnc-SRSF2-4:3