Transcript: lnc-SRSF6-3:1

Basic information

LNCipedia transcript ID: lnc-SRSF6-3:1 
LNCipedia gene ID: lnc-SRSF6-3
Location (hg38): chr20:42685483-42687645
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1078 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000457704; ENST00000457704.1; RP1-232N11.2-001; OTTHUMT00000079284.1
Alternative gene names: ENSG00000229042; RP1-232N11.2; ENSG00000229042.1; OTTHUMG00000032494.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.7962 non-coding 
CPAT coding probability 8.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRSF6-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRSF6-1:1
3.1 lnc-SRSF6-3:1
4.0 lnc-SRSF6-3:1
4.1 lnc-SRSF6-3:1
5.0 lnc-SRSF6-3:1
5.1 lnc-STK4-76:2
5.2 lnc-SRSF6-3:1